Volume 9; Issue 9 Suppleme

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BMC Bioinformatics
Volume 9; Issue 9 Suppleme

BMC Bioinformatics

Volume 9; Issue 9 Suppleme

1

Proceedings of the 2008 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference

Jonathan D Wren, Dawn Wilkins, James C Fuscoe, Susan Bridges, Stephen Winters-Hilt, Yuriy Gusev

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 263 KB

english, 2008

2

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies

Leming Shi, Wendell D Jones, Roderick V Jensen, Stephen C Harris, Roger G Perkins, Federico M Goodsaid, Lei Guo, Lisa J Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin C

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 1.32 MB

english, 2008

3

Large-scale directional relationship extraction and resolution

Cory B Giles, Jonathan D Wren

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 466 KB

english, 2008

4

Hybrid MM/SVM structural sensors for stochastic sequential data

Brian Roux, Stephen Winters-Hilt

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 2.29 MB

english, 2008

5

Clustering ionic flow blockade toggles with a Mixture of HMMs

Alexander Churbanov, Stephen Winters-Hilt

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2008

6

Time-dependent ARMA modeling of genomic sequences

Jerzy S Zielinski, Nidhal Bouaynaya, Dan Schonfeld, William O'Neill

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 622 KB

english, 2008

7

An iterative block-shifting approach to retention time alignment that preserves the shape and area of gas chromatography-mass spectrometry peaks

Minho Chae, Robert Shmookler J Reis, John J Thaden

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 1.65 MB

english, 2008

8

Wanted: unique names for unique atom positions. PDB-wide analysis of diastereotopic atom names of small molecules containing diphosphate

Christopher A Bottoms, Dong Xu

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 443 KB

english, 2008

9

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples

Huixiao Hong, Zhenqiang Su, Weigong Ge, Leming Shi, Roger Perkins, Hong Fang, Joshua Xu, James J Chen, Tao Han, Jim Kaput, James C Fuscoe, Weida Tong

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 299 KB

english, 2008

10

Comprehensive analysis of circadian periodic pattern in plant transcriptome

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 1.67 MB

english, 2008

11

A structural approach for finding functional modules from large biological networks

Mutlu Mete, Fusheng Tang, Xiaowei Xu, Nurcan Yuruk

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 776 KB

english, 2008

12

Validation of an NSP-based (negative selection pattern) gene family identification strategy

Ronald L Frank, Cyriac Kandoth, Fikret Ercal

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 339 KB

english, 2008

13

Testing for treatment effects on gene ontology

Taewon Lee, Varsha G Desai, Cruz Velasco, Robert J S Reis, Robert R Delongchamp

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2008

14

Exhaustive prediction of disease susceptibility to coding base changes in the human genome

Vinayak Kulkarni, Mounir Errami, Robert Barber, Harold R Garner

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 585 KB

english, 2008

15

From microarray to biology: an integrated experimental, statistical and in silico analysis of how the extracellular matrix modulates the phenotype of cancer cells

Mikhail G Dozmorov, Kimberly D Kyker, Paul J Hauser, Ricardo Saban, David D Buethe, Igor Dozmorov, Michael B Centola, Daniel J Culkin, Robert E Hurst

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 3.24 MB

english, 2008

16

ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining

Tianxiao Huan, Andrey Y Sivachenko, Scott H Harrison, Jake Y Chen

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2008

17

MTAP: The Motif Tool Assessment Platform

Daniel Quest, Kathryn Dempsey, Mohammad Shafiullah, Dhundy Bastola, Hesham Ali

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 595 KB

english, 2008

18

Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data

Arun Rawat, Georg J Seifert, Youping Deng

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 452 KB

english, 2008

19

Systems biology approach to identification of biomarkers for metastatic progression in cancer

Andrey A Ptitsyn, Michael M Weil, Douglas H Thamm

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 4.85 MB

english, 2008

20

Very Important Pool (VIP) genes – an application for microarray-based molecular signatures

Zhenqiang Su, Huixiao Hong, Hong Fang, Leming Shi, Roger Perkins, Weida Tong

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 272 KB

english, 2008